GPATCH3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

GPATCH3

G-patch domain containing 3. (324 aa)

Predicted Functional Partners:

FUT8

0.801

ENSCAPP00000004538

0.779

ENSCAPP00000015528

0.720

ENSCAPP00000002395

0.711

ST3GAL6

0.711

ST3GAL4

0.710

CDIPT

0.685

RSPRY1

0.681

PLEKHA8

0.680

ENSCAPP00000003435

0.677

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDIPT	GPATCH3	ENSCAPP00000017778	ENSCAPP00000004858	CDP-diacylglycerol--inositol 3-phosphatidyltransferase.	G-patch domain containing 3.	0.685
ENSCAPP00000002395	ENSCAPP00000003435	ENSCAPP00000002395	ENSCAPP00000003435	annotation not available	annotation not available	0.927
ENSCAPP00000002395	ENSCAPP00000004538	ENSCAPP00000002395	ENSCAPP00000004538	annotation not available	annotation not available	0.471
ENSCAPP00000002395	GPATCH3	ENSCAPP00000002395	ENSCAPP00000004858	annotation not available	G-patch domain containing 3.	0.711
ENSCAPP00000002395	ST3GAL4	ENSCAPP00000002395	ENSCAPP00000017665	annotation not available	ST3 beta-galactoside alpha-2,3-sialyltransferase 4.	0.911
ENSCAPP00000003435	ENSCAPP00000002395	ENSCAPP00000003435	ENSCAPP00000002395	annotation not available	annotation not available	0.927
ENSCAPP00000003435	ENSCAPP00000004538	ENSCAPP00000003435	ENSCAPP00000004538	annotation not available	annotation not available	0.863
ENSCAPP00000003435	GPATCH3	ENSCAPP00000003435	ENSCAPP00000004858	annotation not available	G-patch domain containing 3.	0.677
ENSCAPP00000003435	ST3GAL4	ENSCAPP00000003435	ENSCAPP00000017665	annotation not available	ST3 beta-galactoside alpha-2,3-sialyltransferase 4.	0.919
ENSCAPP00000003435	ST3GAL6	ENSCAPP00000003435	ENSCAPP00000018055	annotation not available	ST3 beta-galactoside alpha-2,3-sialyltransferase 6.	0.932
ENSCAPP00000004538	ENSCAPP00000002395	ENSCAPP00000004538	ENSCAPP00000002395	annotation not available	annotation not available	0.471
ENSCAPP00000004538	ENSCAPP00000003435	ENSCAPP00000004538	ENSCAPP00000003435	annotation not available	annotation not available	0.863
ENSCAPP00000004538	ENSCAPP00000015528	ENSCAPP00000004538	ENSCAPP00000015528	annotation not available	annotation not available	0.960
ENSCAPP00000004538	FUT8	ENSCAPP00000004538	ENSCAPP00000006768	annotation not available	Fucosyltransferase 8.	0.603
ENSCAPP00000004538	GPATCH3	ENSCAPP00000004538	ENSCAPP00000004858	annotation not available	G-patch domain containing 3.	0.779
ENSCAPP00000015528	ENSCAPP00000004538	ENSCAPP00000015528	ENSCAPP00000004538	annotation not available	annotation not available	0.960
ENSCAPP00000015528	FUT8	ENSCAPP00000015528	ENSCAPP00000006768	annotation not available	Fucosyltransferase 8.	0.448
ENSCAPP00000015528	GPATCH3	ENSCAPP00000015528	ENSCAPP00000004858	annotation not available	G-patch domain containing 3.	0.720
FUT8	ENSCAPP00000004538	ENSCAPP00000006768	ENSCAPP00000004538	Fucosyltransferase 8.	annotation not available	0.603
FUT8	ENSCAPP00000015528	ENSCAPP00000006768	ENSCAPP00000015528	Fucosyltransferase 8.	annotation not available	0.448