NFKBIB protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NFKBIB

NFKB inhibitor beta. (295 aa)

Predicted Functional Partners:

ENSCAPP00000015456

0.997

ENSCAPP00000011154

0.989

CHUK

0.988

IKBKB

0.984

NFKB1

0.978

ENSCAPP00000015756

0.975

REL

0.966

ENSCAPP00000016597

0.941

NFKB2

0.938

BTRC

0.836

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BTRC	CHUK	ENSCAPP00000004753	ENSCAPP00000000766	Beta-transducin repeat containing E3 ubiquitin protein ligase.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.668
BTRC	ENSCAPP00000011154	ENSCAPP00000004753	ENSCAPP00000011154	Beta-transducin repeat containing E3 ubiquitin protein ligase.	annotation not available	0.988
BTRC	ENSCAPP00000015456	ENSCAPP00000004753	ENSCAPP00000015456	Beta-transducin repeat containing E3 ubiquitin protein ligase.	annotation not available	0.661
BTRC	ENSCAPP00000015756	ENSCAPP00000004753	ENSCAPP00000015756	Beta-transducin repeat containing E3 ubiquitin protein ligase.	annotation not available	0.642
BTRC	ENSCAPP00000016597	ENSCAPP00000004753	ENSCAPP00000016597	Beta-transducin repeat containing E3 ubiquitin protein ligase.	annotation not available	0.615
BTRC	IKBKB	ENSCAPP00000004753	ENSCAPP00000004955	Beta-transducin repeat containing E3 ubiquitin protein ligase.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.788
BTRC	NFKB1	ENSCAPP00000004753	ENSCAPP00000005885	Beta-transducin repeat containing E3 ubiquitin protein ligase.	Nuclear factor kappa B subunit 1.	0.874
BTRC	NFKB2	ENSCAPP00000004753	ENSCAPP00000012829	Beta-transducin repeat containing E3 ubiquitin protein ligase.	Nuclear factor kappa B subunit 2.	0.873
BTRC	NFKBIB	ENSCAPP00000004753	ENSCAPP00000004871	Beta-transducin repeat containing E3 ubiquitin protein ligase.	NFKB inhibitor beta.	0.836
BTRC	REL	ENSCAPP00000004753	ENSCAPP00000014851	Beta-transducin repeat containing E3 ubiquitin protein ligase.	REL proto-oncogene, NF-kB subunit.	0.614
CHUK	BTRC	ENSCAPP00000000766	ENSCAPP00000004753	Component of inhibitor of nuclear factor kappa B kinase complex.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.668
CHUK	ENSCAPP00000011154	ENSCAPP00000000766	ENSCAPP00000011154	Component of inhibitor of nuclear factor kappa B kinase complex.	annotation not available	0.997
CHUK	ENSCAPP00000015456	ENSCAPP00000000766	ENSCAPP00000015456	Component of inhibitor of nuclear factor kappa B kinase complex.	annotation not available	0.991
CHUK	ENSCAPP00000015756	ENSCAPP00000000766	ENSCAPP00000015756	Component of inhibitor of nuclear factor kappa B kinase complex.	annotation not available	0.961
CHUK	ENSCAPP00000016597	ENSCAPP00000000766	ENSCAPP00000016597	Component of inhibitor of nuclear factor kappa B kinase complex.	annotation not available	0.978
CHUK	IKBKB	ENSCAPP00000000766	ENSCAPP00000004955	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.997
CHUK	NFKB1	ENSCAPP00000000766	ENSCAPP00000005885	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor kappa B subunit 1.	0.976
CHUK	NFKB2	ENSCAPP00000000766	ENSCAPP00000012829	Component of inhibitor of nuclear factor kappa B kinase complex.	Nuclear factor kappa B subunit 2.	0.962
CHUK	NFKBIB	ENSCAPP00000000766	ENSCAPP00000004871	Component of inhibitor of nuclear factor kappa B kinase complex.	NFKB inhibitor beta.	0.988
CHUK	REL	ENSCAPP00000000766	ENSCAPP00000014851	Component of inhibitor of nuclear factor kappa B kinase complex.	REL proto-oncogene, NF-kB subunit.	0.908