SMARCD3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SMARCD3

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3. (430 aa)

Predicted Functional Partners:

SMARCC2

0.999

SMARCD1

0.999

SMARCA4

0.999

SMARCC1

0.999

SMARCB1

0.998

ACTL6A

0.998

ARID1B

0.998

SMARCE1

0.998

BCL7A

0.997

DPF3

0.997

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTL6A	ARID1B	ENSCAPP00000013540	ENSCAPP00000013903	Actin like 6A.	AT-rich interaction domain 1B.	0.998
ACTL6A	BCL7A	ENSCAPP00000013540	ENSCAPP00000001559	Actin like 6A.	BAF chromatin remodeling complex subunit BCL7A.	0.998
ACTL6A	DPF3	ENSCAPP00000013540	ENSCAPP00000009014	Actin like 6A.	Double PHD fingers 3.	0.997
ACTL6A	SMARCA4	ENSCAPP00000013540	ENSCAPP00000015996	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.998
ACTL6A	SMARCB1	ENSCAPP00000013540	ENSCAPP00000002532	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.999
ACTL6A	SMARCC1	ENSCAPP00000013540	ENSCAPP00000017805	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.999
ACTL6A	SMARCC2	ENSCAPP00000013540	ENSCAPP00000005310	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.998
ACTL6A	SMARCD1	ENSCAPP00000013540	ENSCAPP00000006701	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.999
ACTL6A	SMARCD3	ENSCAPP00000013540	ENSCAPP00000004882	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.998
ACTL6A	SMARCE1	ENSCAPP00000013540	ENSCAPP00000018162	Actin like 6A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.999
ARID1B	ACTL6A	ENSCAPP00000013903	ENSCAPP00000013540	AT-rich interaction domain 1B.	Actin like 6A.	0.998
ARID1B	BCL7A	ENSCAPP00000013903	ENSCAPP00000001559	AT-rich interaction domain 1B.	BAF chromatin remodeling complex subunit BCL7A.	0.998
ARID1B	DPF3	ENSCAPP00000013903	ENSCAPP00000009014	AT-rich interaction domain 1B.	Double PHD fingers 3.	0.998
ARID1B	SMARCA4	ENSCAPP00000013903	ENSCAPP00000015996	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.999
ARID1B	SMARCB1	ENSCAPP00000013903	ENSCAPP00000002532	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.999
ARID1B	SMARCC1	ENSCAPP00000013903	ENSCAPP00000017805	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.998
ARID1B	SMARCC2	ENSCAPP00000013903	ENSCAPP00000005310	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.998
ARID1B	SMARCD1	ENSCAPP00000013903	ENSCAPP00000006701	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.998
ARID1B	SMARCD3	ENSCAPP00000013903	ENSCAPP00000004882	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.998
ARID1B	SMARCE1	ENSCAPP00000013903	ENSCAPP00000018162	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.998