Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000004889annotation not available (171 aa)    
Predicted Functional Partners:
UTP11
UTP11 small subunit processome component.
   
 0.972
KRR1
KRR1 small subunit processome component homolog.
   
 0.969
EMG1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.959
NGDN
Neuroguidin.
   
 0.951
WDR46
WD repeat domain 46.
   
 0.950
UTP20
UTP20 small subunit processome component.
   
 0.944
IMP4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 0.941
ENSCAPP00000015680
annotation not available
   
 
 0.940
RCL1
RNA terminal phosphate cyclase like 1.
   
 0.939
DCAF13
DDB1 and CUL4 associated factor 13.
   
 0.938
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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