Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTCHD4Patched domain containing 4. (704 aa)    
Predicted Functional Partners:
DDA1
DET1 and DDB1 associated 1.
      
 0.663
HIVEP1
HIVEP zinc finger 1.
      
 0.622
DISP3
Dispatched RND transporter family member 3.
   
  
 0.588
VCPIP1
Valosin containing protein interacting protein 1.
      
 0.571
TMEM178A
Transmembrane protein 178A.
      
 0.570
PXMP4
Peroxisomal membrane protein 4.
      
 0.569
GRID2IP
Grid2 interacting protein.
    
 
 0.559
FICD
FIC domain containing.
      
 0.518
VPS26B
VPS26, retromer complex component B.
    
 
 0.504
SNX27
Sorting nexin 27.
    
 
 0.501
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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