BPIFC protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

BPIFC

BPI fold containing family C. (508 aa)

Predicted Functional Partners:

ENSCAPP00000009303

0.708

ENSCAPP00000014109

0.689

ENSCAPP00000013134

0.668

ENSCAPP00000007533

0.570

ENSCAPP00000006357

0.549

APOB

0.531

CD180

0.524

ENSCAPP00000017899

0.514

ENSCAPP00000003824

0.472

ENSCAPP00000015384

0.468

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOB	BPIFC	ENSCAPP00000013823	ENSCAPP00000004905	Apolipoprotein B.	BPI fold containing family C.	0.531
APOB	ENSCAPP00000003824	ENSCAPP00000013823	ENSCAPP00000003824	Apolipoprotein B.	annotation not available	0.661
APOB	ENSCAPP00000009303	ENSCAPP00000013823	ENSCAPP00000009303	Apolipoprotein B.	annotation not available	0.942
APOB	ENSCAPP00000013134	ENSCAPP00000013823	ENSCAPP00000013134	Apolipoprotein B.	annotation not available	0.547
APOB	ENSCAPP00000015384	ENSCAPP00000013823	ENSCAPP00000015384	Apolipoprotein B.	annotation not available	0.999
APOB	ENSCAPP00000017899	ENSCAPP00000013823	ENSCAPP00000017899	Apolipoprotein B.	annotation not available	0.977
BPIFC	APOB	ENSCAPP00000004905	ENSCAPP00000013823	BPI fold containing family C.	Apolipoprotein B.	0.531
BPIFC	CD180	ENSCAPP00000004905	ENSCAPP00000011973	BPI fold containing family C.	CD180 molecule.	0.524
BPIFC	ENSCAPP00000003824	ENSCAPP00000004905	ENSCAPP00000003824	BPI fold containing family C.	annotation not available	0.472
BPIFC	ENSCAPP00000006357	ENSCAPP00000004905	ENSCAPP00000006357	BPI fold containing family C.	annotation not available	0.549
BPIFC	ENSCAPP00000007533	ENSCAPP00000004905	ENSCAPP00000007533	BPI fold containing family C.	annotation not available	0.570
BPIFC	ENSCAPP00000009303	ENSCAPP00000004905	ENSCAPP00000009303	BPI fold containing family C.	annotation not available	0.708
BPIFC	ENSCAPP00000013134	ENSCAPP00000004905	ENSCAPP00000013134	BPI fold containing family C.	annotation not available	0.668
BPIFC	ENSCAPP00000014109	ENSCAPP00000004905	ENSCAPP00000014109	BPI fold containing family C.	annotation not available	0.689
BPIFC	ENSCAPP00000015384	ENSCAPP00000004905	ENSCAPP00000015384	BPI fold containing family C.	annotation not available	0.468
BPIFC	ENSCAPP00000017899	ENSCAPP00000004905	ENSCAPP00000017899	BPI fold containing family C.	annotation not available	0.514
CD180	BPIFC	ENSCAPP00000011973	ENSCAPP00000004905	CD180 molecule.	BPI fold containing family C.	0.524
CD180	ENSCAPP00000013134	ENSCAPP00000011973	ENSCAPP00000013134	CD180 molecule.	annotation not available	0.955
CD180	ENSCAPP00000014109	ENSCAPP00000011973	ENSCAPP00000014109	CD180 molecule.	annotation not available	0.987
ENSCAPP00000003824	APOB	ENSCAPP00000003824	ENSCAPP00000013823	annotation not available	Apolipoprotein B.	0.661