ENSCAPP00000004908 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004908

annotation not available (724 aa)

Predicted Functional Partners:

PCNA

0.994

FEN1

0.966

UHRF1

0.932

POLB

0.930

POLD1

0.922

RFC4

0.922

TRAF6

0.904

XRCC1

0.895

ENSCAPP00000002903

0.888

ENSCAPP00000017732

0.878

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002903	ENSCAPP00000004908	ENSCAPP00000002903	ENSCAPP00000004908	annotation not available	annotation not available	0.888
ENSCAPP00000002903	ENSCAPP00000017732	ENSCAPP00000002903	ENSCAPP00000017732	annotation not available	annotation not available	0.958
ENSCAPP00000002903	FEN1	ENSCAPP00000002903	ENSCAPP00000003648	annotation not available	Flap structure-specific endonuclease 1.	0.921
ENSCAPP00000002903	PCNA	ENSCAPP00000002903	ENSCAPP00000014064	annotation not available	Proliferating cell nuclear antigen.	0.939
ENSCAPP00000002903	POLD1	ENSCAPP00000002903	ENSCAPP00000003618	annotation not available	DNA polymerase delta 1, catalytic subunit.	0.974
ENSCAPP00000002903	RFC4	ENSCAPP00000002903	ENSCAPP00000010325	annotation not available	Replication factor C subunit 4.	0.927
ENSCAPP00000002903	UHRF1	ENSCAPP00000002903	ENSCAPP00000008499	annotation not available	Ubiquitin like with PHD and ring finger domains 1.	0.697
ENSCAPP00000004908	ENSCAPP00000002903	ENSCAPP00000004908	ENSCAPP00000002903	annotation not available	annotation not available	0.888
ENSCAPP00000004908	ENSCAPP00000017732	ENSCAPP00000004908	ENSCAPP00000017732	annotation not available	annotation not available	0.878
ENSCAPP00000004908	FEN1	ENSCAPP00000004908	ENSCAPP00000003648	annotation not available	Flap structure-specific endonuclease 1.	0.966
ENSCAPP00000004908	PCNA	ENSCAPP00000004908	ENSCAPP00000014064	annotation not available	Proliferating cell nuclear antigen.	0.994
ENSCAPP00000004908	POLB	ENSCAPP00000004908	ENSCAPP00000006013	annotation not available	DNA polymerase beta.	0.930
ENSCAPP00000004908	POLD1	ENSCAPP00000004908	ENSCAPP00000003618	annotation not available	DNA polymerase delta 1, catalytic subunit.	0.922
ENSCAPP00000004908	RFC4	ENSCAPP00000004908	ENSCAPP00000010325	annotation not available	Replication factor C subunit 4.	0.922
ENSCAPP00000004908	TRAF6	ENSCAPP00000004908	ENSCAPP00000008546	annotation not available	TNF receptor associated factor 6.	0.904
ENSCAPP00000004908	UHRF1	ENSCAPP00000004908	ENSCAPP00000008499	annotation not available	Ubiquitin like with PHD and ring finger domains 1.	0.932
ENSCAPP00000004908	XRCC1	ENSCAPP00000004908	ENSCAPP00000008073	annotation not available	X-ray repair cross complementing 1.	0.895
ENSCAPP00000017732	ENSCAPP00000002903	ENSCAPP00000017732	ENSCAPP00000002903	annotation not available	annotation not available	0.958
ENSCAPP00000017732	ENSCAPP00000004908	ENSCAPP00000017732	ENSCAPP00000004908	annotation not available	annotation not available	0.878
ENSCAPP00000017732	FEN1	ENSCAPP00000017732	ENSCAPP00000003648	annotation not available	Flap structure-specific endonuclease 1.	0.781