Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB2BRAB2B, member RAS oncogene family. (147 aa)    
Predicted Functional Partners:
RAB2A
RAB2A, member RAS oncogene family.
   
   0.997
RAB14
RAB14, member RAS oncogene family.
   
  0.986
FAM71F2
Family with sequence similarity 71 member F2.
    
 0.969
RAB10
RAB10, member RAS oncogene family.
   
  0.895
RAB7A
RAB7A, member RAS oncogene family.
   
  0.889
TBC1D1
TBC1 domain family member 1.
    
 0.880
SLC2A4
Solute carrier family 2 member 4.
    
 0.872
TBC1D4
TBC1 domain family member 4.
    
 0.837
GORASP2
Golgi reassembly stacking protein 2.
   
 0.837
BLZF1
Basic leucine zipper nuclear factor 1.
    
 0.832
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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