MATN3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MATN3

Matrilin 3. (411 aa)

Predicted Functional Partners:

MATN2

0.913

MATN4

0.899

MATN1

0.869

PDIA4

0.859

ENSCAPP00000003215

0.845

ENSCAPP00000015526

0.839

PBLD

0.800

ENSCAPP00000009290

0.800

MYSM1

0.787

LUM

0.785

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000003215	MATN3	ENSCAPP00000003215	ENSCAPP00000004938	annotation not available	Matrilin 3.	0.845
ENSCAPP00000009290	ENSCAPP00000015526	ENSCAPP00000009290	ENSCAPP00000015526	annotation not available	annotation not available	0.612
ENSCAPP00000009290	LUM	ENSCAPP00000009290	ENSCAPP00000005205	annotation not available	Lumican.	0.462
ENSCAPP00000009290	MATN1	ENSCAPP00000009290	ENSCAPP00000008949	annotation not available	Matrilin 1.	0.444
ENSCAPP00000009290	MATN3	ENSCAPP00000009290	ENSCAPP00000004938	annotation not available	Matrilin 3.	0.800
ENSCAPP00000009290	MATN4	ENSCAPP00000009290	ENSCAPP00000009919	annotation not available	Matrilin 4.	0.700
ENSCAPP00000009290	MYSM1	ENSCAPP00000009290	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.442
ENSCAPP00000015526	ENSCAPP00000009290	ENSCAPP00000015526	ENSCAPP00000009290	annotation not available	annotation not available	0.612
ENSCAPP00000015526	LUM	ENSCAPP00000015526	ENSCAPP00000005205	annotation not available	Lumican.	0.456
ENSCAPP00000015526	MATN3	ENSCAPP00000015526	ENSCAPP00000004938	annotation not available	Matrilin 3.	0.839
ENSCAPP00000015526	MYSM1	ENSCAPP00000015526	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.787
LUM	ENSCAPP00000009290	ENSCAPP00000005205	ENSCAPP00000009290	Lumican.	annotation not available	0.462
LUM	ENSCAPP00000015526	ENSCAPP00000005205	ENSCAPP00000015526	Lumican.	annotation not available	0.456
LUM	MATN2	ENSCAPP00000005205	ENSCAPP00000006720	Lumican.	Matrilin 2.	0.785
LUM	MATN3	ENSCAPP00000005205	ENSCAPP00000004938	Lumican.	Matrilin 3.	0.785
LUM	MATN4	ENSCAPP00000005205	ENSCAPP00000009919	Lumican.	Matrilin 4.	0.785
MATN1	ENSCAPP00000009290	ENSCAPP00000008949	ENSCAPP00000009290	Matrilin 1.	annotation not available	0.444
MATN1	MATN2	ENSCAPP00000008949	ENSCAPP00000006720	Matrilin 1.	Matrilin 2.	0.864
MATN1	MATN3	ENSCAPP00000008949	ENSCAPP00000004938	Matrilin 1.	Matrilin 3.	0.869
MATN1	MATN4	ENSCAPP00000008949	ENSCAPP00000009919	Matrilin 1.	Matrilin 4.	0.962