STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RIOX2Ribosomal oxygenase 2. (389 aa)    
Predicted Functional Partners:
RPL8
Ribosomal protein L8.
    
 0.937
ENSCAPP00000003052
annotation not available
    
 0.895
ENSCAPP00000010472
annotation not available
    
 0.895
ENSCAPP00000013310
annotation not available
    
 0.895
RPL3
Ribosomal protein L3.
    
   0.801
CLIC1
Chloride intracellular channel 1.
    
   0.695
DIP2B
Disco interacting protein 2 homolog B.
      
 0.682
TYW5
tRNA-yW synthesizing protein 5.
      
 0.674
ENSCAPP00000018389
annotation not available
      
 0.664
UTP4
UTP4 small subunit processome component.
   
   0.648
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.