STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX5DEAD-box helicase 5. (374 aa)    
Predicted Functional Partners:
ENSCAPP00000015731
annotation not available
  
 0.965
SF3B1
Splicing factor 3b subunit 1.
   
 0.963
DHX9
DExH-box helicase 9.
  
 0.931
ENSCAPP00000015389
annotation not available
  
 
0.925
ENSCAPP00000011676
annotation not available
   
 0.924
GTPBP4
GTP binding protein 4.
   
 0.919
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.901
WDR12
WD repeat domain 12.
   
 0.900
DDX18
DEAD-box helicase 18.
  
0.894
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.877
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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