STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF13PHD finger protein 13. (225 aa)    
Predicted Functional Partners:
TBX20
T-box transcription factor 20.
    
   0.959
DNASE1L2
Deoxyribonuclease 1 like 2.
    
  0.936
MCRS1
Microspherule protein 1.
    
 0.913
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 0.866
BLVRA
Biliverdin reductase A.
    
   0.858
KANSL2
KAT8 regulatory NSL complex subunit 2.
    
 0.854
KANSL3
KAT8 regulatory NSL complex subunit 3.
    
 0.820
TEX30
Testis expressed 30.
    
 0.820
ENSCAPP00000015921
annotation not available
    
 0.809
SIN3A
SIN3 transcription regulator family member A.
    
 0.807
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.