STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECM1Extracellular matrix protein 1. (496 aa)    
Predicted Functional Partners:
MRC1
Mannose receptor C-type 1.
     
 0.619
ZBTB44
Zinc finger and BTB domain containing 44.
    
 
 0.606
ENSCAPP00000009599
annotation not available
    
 0.585
SLC39A13
Solute carrier family 39 member 13.
      
 0.569
DDX52
DExD-box helicase 52.
      
 0.569
SLC15A2
Solute carrier family 15 member 2.
      
 0.568
MRPS14
Mitochondrial ribosomal protein S14.
      
 0.565
ZSWIM8
Zinc finger SWIM-type containing 8.
      
 0.565
BMS1
BMS1 ribosome biogenesis factor.
      
 0.564
TAF9
TATA-box binding protein associated factor 9.
      
 0.556
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.