NUP62 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NUP62

Nucleoporin 62. (516 aa)

Predicted Functional Partners:

NUP93

0.997

NUP205

0.996

ENSCAPP00000014648

0.995

NUP88

0.994

NUP214

0.994

ENSCAPP00000017022

0.993

NUP37

0.992

NUP98

0.991

RANBP2

0.991

NUP35

0.990

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000014648	NUP214	ENSCAPP00000014648	ENSCAPP00000006048	annotation not available	Nucleoporin 214.	0.919
ENSCAPP00000014648	NUP35	ENSCAPP00000014648	ENSCAPP00000002789	annotation not available	Nucleoporin 35.	0.923
ENSCAPP00000014648	NUP37	ENSCAPP00000014648	ENSCAPP00000012159	annotation not available	Nucleoporin 37.	0.594
ENSCAPP00000014648	NUP62	ENSCAPP00000014648	ENSCAPP00000004985	annotation not available	Nucleoporin 62.	0.995
ENSCAPP00000014648	NUP88	ENSCAPP00000014648	ENSCAPP00000005611	annotation not available	Nucleoporin 88.	0.782
ENSCAPP00000014648	NUP93	ENSCAPP00000014648	ENSCAPP00000005273	annotation not available	Nucleoporin 93.	0.927
ENSCAPP00000014648	NUP98	ENSCAPP00000014648	ENSCAPP00000003109	annotation not available	Nucleoporin 98.	0.937
ENSCAPP00000014648	RANBP2	ENSCAPP00000014648	ENSCAPP00000009214	annotation not available	RAN binding protein 2.	0.727
ENSCAPP00000017022	NUP205	ENSCAPP00000017022	ENSCAPP00000012274	annotation not available	Nucleoporin 205.	0.994
ENSCAPP00000017022	NUP214	ENSCAPP00000017022	ENSCAPP00000006048	annotation not available	Nucleoporin 214.	0.990
ENSCAPP00000017022	NUP35	ENSCAPP00000017022	ENSCAPP00000002789	annotation not available	Nucleoporin 35.	0.994
ENSCAPP00000017022	NUP37	ENSCAPP00000017022	ENSCAPP00000012159	annotation not available	Nucleoporin 37.	0.999
ENSCAPP00000017022	NUP62	ENSCAPP00000017022	ENSCAPP00000004985	annotation not available	Nucleoporin 62.	0.993
ENSCAPP00000017022	NUP88	ENSCAPP00000017022	ENSCAPP00000005611	annotation not available	Nucleoporin 88.	0.996
ENSCAPP00000017022	NUP93	ENSCAPP00000017022	ENSCAPP00000005273	annotation not available	Nucleoporin 93.	0.997
ENSCAPP00000017022	NUP98	ENSCAPP00000017022	ENSCAPP00000003109	annotation not available	Nucleoporin 98.	0.998
ENSCAPP00000017022	RANBP2	ENSCAPP00000017022	ENSCAPP00000009214	annotation not available	RAN binding protein 2.	0.989
NUP205	ENSCAPP00000017022	ENSCAPP00000012274	ENSCAPP00000017022	Nucleoporin 205.	annotation not available	0.994
NUP205	NUP214	ENSCAPP00000012274	ENSCAPP00000006048	Nucleoporin 205.	Nucleoporin 214.	0.995
NUP205	NUP35	ENSCAPP00000012274	ENSCAPP00000002789	Nucleoporin 205.	Nucleoporin 35.	0.993