ENSCAPP00000004998 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000004998

annotation not available (540 aa)

Predicted Functional Partners:

BBS7

0.997

ENSCAPP00000000952

0.997

ENSCAPP00000002351

0.997

ENSCAPP00000006411

0.997

ENSCAPP00000007661

0.997

BBS2

0.997

ENSCAPP00000016903

0.991

KLHL41

0.982

ENSCAPP00000012564

0.953

KLHL40

0.940

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS2	BBS7	ENSCAPP00000018596	ENSCAPP00000000345	Bardet-Biedl syndrome 2.	Bardet-Biedl syndrome 7.	0.997
BBS2	ENSCAPP00000000952	ENSCAPP00000018596	ENSCAPP00000000952	Bardet-Biedl syndrome 2.	annotation not available	0.998
BBS2	ENSCAPP00000002351	ENSCAPP00000018596	ENSCAPP00000002351	Bardet-Biedl syndrome 2.	annotation not available	0.995
BBS2	ENSCAPP00000004998	ENSCAPP00000018596	ENSCAPP00000004998	Bardet-Biedl syndrome 2.	annotation not available	0.997
BBS2	ENSCAPP00000006411	ENSCAPP00000018596	ENSCAPP00000006411	Bardet-Biedl syndrome 2.	annotation not available	0.994
BBS2	ENSCAPP00000007661	ENSCAPP00000018596	ENSCAPP00000007661	Bardet-Biedl syndrome 2.	annotation not available	0.997
BBS2	ENSCAPP00000016903	ENSCAPP00000018596	ENSCAPP00000016903	Bardet-Biedl syndrome 2.	annotation not available	0.977
BBS2	KLHL40	ENSCAPP00000018596	ENSCAPP00000004227	Bardet-Biedl syndrome 2.	Kelch like family member 40.	0.899
BBS2	KLHL41	ENSCAPP00000018596	ENSCAPP00000005920	Bardet-Biedl syndrome 2.	Kelch like family member 41.	0.969
BBS7	BBS2	ENSCAPP00000000345	ENSCAPP00000018596	Bardet-Biedl syndrome 7.	Bardet-Biedl syndrome 2.	0.997
BBS7	ENSCAPP00000000952	ENSCAPP00000000345	ENSCAPP00000000952	Bardet-Biedl syndrome 7.	annotation not available	0.996
BBS7	ENSCAPP00000002351	ENSCAPP00000000345	ENSCAPP00000002351	Bardet-Biedl syndrome 7.	annotation not available	0.994
BBS7	ENSCAPP00000004998	ENSCAPP00000000345	ENSCAPP00000004998	Bardet-Biedl syndrome 7.	annotation not available	0.997
BBS7	ENSCAPP00000006411	ENSCAPP00000000345	ENSCAPP00000006411	Bardet-Biedl syndrome 7.	annotation not available	0.993
BBS7	ENSCAPP00000007661	ENSCAPP00000000345	ENSCAPP00000007661	Bardet-Biedl syndrome 7.	annotation not available	0.996
BBS7	ENSCAPP00000016903	ENSCAPP00000000345	ENSCAPP00000016903	Bardet-Biedl syndrome 7.	annotation not available	0.986
BBS7	KLHL40	ENSCAPP00000000345	ENSCAPP00000004227	Bardet-Biedl syndrome 7.	Kelch like family member 40.	0.904
BBS7	KLHL41	ENSCAPP00000000345	ENSCAPP00000005920	Bardet-Biedl syndrome 7.	Kelch like family member 41.	0.970
ENSCAPP00000000952	BBS2	ENSCAPP00000000952	ENSCAPP00000018596	annotation not available	Bardet-Biedl syndrome 2.	0.998
ENSCAPP00000000952	BBS7	ENSCAPP00000000952	ENSCAPP00000000345	annotation not available	Bardet-Biedl syndrome 7.	0.996