Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZFP30ZFP30 zinc finger protein. (503 aa)    
Predicted Functional Partners:
ZFP14
ZFP14 zinc finger protein.
   
    0.864
MYSM1
Myb like, SWIRM and MPN domains 1.
    
  0.556
GART
annotation not available
     
  0.505
TRIM28
Tripartite motif containing 28.
    
 0.497
BARD1
BRCA1 associated RING domain 1.
    
 0.484
SPOPL
Speckle type BTB/POZ protein like.
   
  0.453
SPOP
Speckle type BTB/POZ protein.
   
  0.453
ATM
ATM serine/threonine kinase.
    
 0.450
EZH1
Enhancer of zeste 1 polycomb repressive complex 2 subunit.
   
  0.449
EZH2
Enhancer of zeste 2 polycomb repressive complex 2 subunit.
   
  0.449
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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