Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PEF1penta-EF-hand domain containing 1. (245 aa)    
Predicted Functional Partners:
KLHL12
Kelch like family member 12.
    
 0.991
ENSCAPP00000008248
annotation not available
    
 0.984
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.961
ENSCAPP00000002153
annotation not available
    
 
 0.932
SEC24A
SEC24 homolog A, COPII coat complex component.
    
 0.925
ENSCAPP00000011033
annotation not available
     
 0.921
SEC24B
SEC24 homolog B, COPII coat complex component.
    
 0.918
SAR1B
Secretion associated Ras related GTPase 1B.
    
 0.908
SEC24D
SEC24 homolog D, COPII coat complex component.
     
 0.906
PDCD6
Programmed cell death 6.
    
  0.904
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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