Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005027annotation not available (433 aa)    
Predicted Functional Partners:
DDX58
DExD/H-box helicase 58.
   
 0.975
ENSCAPP00000012392
annotation not available
     
 0.844
ENSCAPP00000000528
annotation not available
    
   0.836
ENSCAPP00000012029
annotation not available
    
   0.830
IFIH1
Interferon induced with helicase C domain 1.
   
 0.784
MAVS
Mitochondrial antiviral signaling protein.
    
 0.734
SATB2
SATB homeobox 2.
    
   0.729
ENSCAPP00000017785
annotation not available
    
   0.729
UBE2L6
Ubiquitin conjugating enzyme E2 L6.
    
 0.714
SQSTM1
Sequestosome 1.
    
 0.706
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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