OCIAD1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OCIAD1

OCIA domain containing 1. (234 aa)

Predicted Functional Partners:

ENSCAPP00000005053

0.855

PHB2

0.775

ENSCAPP00000013887

0.628

ENSCAPP00000006642

0.612

TRUB2

0.611

ENSCAPP00000011221

0.571

ENSCAPP00000000548

0.570

ENSCAPP00000015953

0.570

SLC37A4

0.568

CYB5B

0.567

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYB5B	OCIAD1	ENSCAPP00000009000	ENSCAPP00000005035	Cytochrome b5 type B.	OCIA domain containing 1.	0.567
CYB5B	SLC37A4	ENSCAPP00000009000	ENSCAPP00000000703	Cytochrome b5 type B.	Solute carrier family 37 member 4.	0.462
ENSCAPP00000000548	OCIAD1	ENSCAPP00000000548	ENSCAPP00000005035	annotation not available	OCIA domain containing 1.	0.570
ENSCAPP00000005053	ENSCAPP00000013887	ENSCAPP00000005053	ENSCAPP00000013887	annotation not available	annotation not available	0.989
ENSCAPP00000005053	OCIAD1	ENSCAPP00000005053	ENSCAPP00000005035	annotation not available	OCIA domain containing 1.	0.855
ENSCAPP00000005053	PHB2	ENSCAPP00000005053	ENSCAPP00000008094	annotation not available	Prohibitin 2.	0.534
ENSCAPP00000005053	TRUB2	ENSCAPP00000005053	ENSCAPP00000000266	annotation not available	TruB pseudouridine synthase family member 2.	0.439
ENSCAPP00000006642	ENSCAPP00000013887	ENSCAPP00000006642	ENSCAPP00000013887	annotation not available	annotation not available	0.978
ENSCAPP00000006642	OCIAD1	ENSCAPP00000006642	ENSCAPP00000005035	annotation not available	OCIA domain containing 1.	0.612
ENSCAPP00000006642	PHB2	ENSCAPP00000006642	ENSCAPP00000008094	annotation not available	Prohibitin 2.	0.952
ENSCAPP00000006642	TRUB2	ENSCAPP00000006642	ENSCAPP00000000266	annotation not available	TruB pseudouridine synthase family member 2.	0.454
ENSCAPP00000011221	OCIAD1	ENSCAPP00000011221	ENSCAPP00000005035	annotation not available	OCIA domain containing 1.	0.571
ENSCAPP00000011221	TRUB2	ENSCAPP00000011221	ENSCAPP00000000266	annotation not available	TruB pseudouridine synthase family member 2.	0.457
ENSCAPP00000013887	ENSCAPP00000005053	ENSCAPP00000013887	ENSCAPP00000005053	annotation not available	annotation not available	0.989
ENSCAPP00000013887	ENSCAPP00000006642	ENSCAPP00000013887	ENSCAPP00000006642	annotation not available	annotation not available	0.978
ENSCAPP00000013887	OCIAD1	ENSCAPP00000013887	ENSCAPP00000005035	annotation not available	OCIA domain containing 1.	0.628
ENSCAPP00000013887	PHB2	ENSCAPP00000013887	ENSCAPP00000008094	annotation not available	Prohibitin 2.	0.817
ENSCAPP00000015953	OCIAD1	ENSCAPP00000015953	ENSCAPP00000005035	annotation not available	OCIA domain containing 1.	0.570
OCIAD1	CYB5B	ENSCAPP00000005035	ENSCAPP00000009000	OCIA domain containing 1.	Cytochrome b5 type B.	0.567
OCIAD1	ENSCAPP00000000548	ENSCAPP00000005035	ENSCAPP00000000548	OCIA domain containing 1.	annotation not available	0.570