ASB16 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASB16

Ankyrin repeat and SOCS box containing 16. (399 aa)

Predicted Functional Partners:

IFT81

0.691

IFT22

0.660

LEO1

0.660

IFT88

0.635

ENSCAPP00000016241

0.628

ENSCAPP00000008760

0.626

IFT57

0.618

IFT172

0.613

ENSCAPP00000017181

0.605

TTC26

0.597

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB16	ENSCAPP00000008760	ENSCAPP00000005055	ENSCAPP00000008760	Ankyrin repeat and SOCS box containing 16.	annotation not available	0.626
ASB16	ENSCAPP00000016241	ENSCAPP00000005055	ENSCAPP00000016241	Ankyrin repeat and SOCS box containing 16.	annotation not available	0.628
ASB16	ENSCAPP00000017181	ENSCAPP00000005055	ENSCAPP00000017181	Ankyrin repeat and SOCS box containing 16.	annotation not available	0.605
ASB16	IFT172	ENSCAPP00000005055	ENSCAPP00000017314	Ankyrin repeat and SOCS box containing 16.	Intraflagellar transport 172.	0.613
ASB16	IFT22	ENSCAPP00000005055	ENSCAPP00000003594	Ankyrin repeat and SOCS box containing 16.	Intraflagellar transport 22.	0.660
ASB16	IFT57	ENSCAPP00000005055	ENSCAPP00000011105	Ankyrin repeat and SOCS box containing 16.	Intraflagellar transport 57.	0.618
ASB16	IFT81	ENSCAPP00000005055	ENSCAPP00000017294	Ankyrin repeat and SOCS box containing 16.	Intraflagellar transport 81.	0.691
ASB16	IFT88	ENSCAPP00000005055	ENSCAPP00000015202	Ankyrin repeat and SOCS box containing 16.	Intraflagellar transport 88.	0.635
ASB16	LEO1	ENSCAPP00000005055	ENSCAPP00000016497	Ankyrin repeat and SOCS box containing 16.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.660
ASB16	TTC26	ENSCAPP00000005055	ENSCAPP00000009360	Ankyrin repeat and SOCS box containing 16.	Tetratricopeptide repeat domain 26.	0.597
ENSCAPP00000008760	ASB16	ENSCAPP00000008760	ENSCAPP00000005055	annotation not available	Ankyrin repeat and SOCS box containing 16.	0.626
ENSCAPP00000008760	ENSCAPP00000016241	ENSCAPP00000008760	ENSCAPP00000016241	annotation not available	annotation not available	0.997
ENSCAPP00000008760	IFT172	ENSCAPP00000008760	ENSCAPP00000017314	annotation not available	Intraflagellar transport 172.	0.997
ENSCAPP00000008760	IFT22	ENSCAPP00000008760	ENSCAPP00000003594	annotation not available	Intraflagellar transport 22.	0.982
ENSCAPP00000008760	IFT57	ENSCAPP00000008760	ENSCAPP00000011105	annotation not available	Intraflagellar transport 57.	0.997
ENSCAPP00000008760	IFT81	ENSCAPP00000008760	ENSCAPP00000017294	annotation not available	Intraflagellar transport 81.	0.997
ENSCAPP00000008760	IFT88	ENSCAPP00000008760	ENSCAPP00000015202	annotation not available	Intraflagellar transport 88.	0.997
ENSCAPP00000008760	TTC26	ENSCAPP00000008760	ENSCAPP00000009360	annotation not available	Tetratricopeptide repeat domain 26.	0.997
ENSCAPP00000016241	ASB16	ENSCAPP00000016241	ENSCAPP00000005055	annotation not available	Ankyrin repeat and SOCS box containing 16.	0.628
ENSCAPP00000016241	ENSCAPP00000008760	ENSCAPP00000016241	ENSCAPP00000008760	annotation not available	annotation not available	0.997