Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005103annotation not available (585 aa)    
Predicted Functional Partners:
RAB27A
RAB27A, member RAS oncogene family.
    
 0.990
MYO5C
Myosin VC.
   
  0.949
DYNLL2
Dynein light chain LC8-type 2.
    
 0.943
ENSCAPP00000006827
annotation not available
   
 
  0.938
SPIRE2
Spire type actin nucleation factor 2.
   
 0.934
ENSCAPP00000011751
annotation not available
    
 
 0.924
ACTG2
Actin gamma 2, smooth muscle.
    
 0.911
ACTA1
Actin alpha 1, skeletal muscle.
    
 0.911
ACTC1
Actin alpha cardiac muscle 1.
    
 0.911
ACTA2
Actin alpha 2, smooth muscle.
    
 0.911
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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