NFU1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NFU1

NFU1 iron-sulfur cluster scaffold. (236 aa)

Predicted Functional Partners:

ENSCAPP00000010350

0.992

ISCU

0.975

ENSCAPP00000008637

0.958

SDHB

0.949

ENSCAPP00000002569

0.932

ENSCAPP00000009625

0.932

SCLY

0.928

FXN

0.898

ENSCAPP00000017570

0.889

ENSCAPP00000010034

0.880

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002569	ENSCAPP00000008637	ENSCAPP00000002569	ENSCAPP00000008637	annotation not available	annotation not available	0.960
ENSCAPP00000002569	ENSCAPP00000010350	ENSCAPP00000002569	ENSCAPP00000010350	annotation not available	annotation not available	0.568
ENSCAPP00000002569	ENSCAPP00000017570	ENSCAPP00000002569	ENSCAPP00000017570	annotation not available	annotation not available	0.896
ENSCAPP00000002569	FXN	ENSCAPP00000002569	ENSCAPP00000003299	annotation not available	Frataxin.	0.881
ENSCAPP00000002569	ISCU	ENSCAPP00000002569	ENSCAPP00000013312	annotation not available	Iron-sulfur cluster assembly enzyme.	0.969
ENSCAPP00000002569	NFU1	ENSCAPP00000002569	ENSCAPP00000005112	annotation not available	NFU1 iron-sulfur cluster scaffold.	0.932
ENSCAPP00000002569	SCLY	ENSCAPP00000002569	ENSCAPP00000002035	annotation not available	Selenocysteine lyase.	0.866
ENSCAPP00000002569	SDHB	ENSCAPP00000002569	ENSCAPP00000014177	annotation not available	Succinate dehydrogenase complex iron sulfur subunit B.	0.583
ENSCAPP00000008637	ENSCAPP00000002569	ENSCAPP00000008637	ENSCAPP00000002569	annotation not available	annotation not available	0.960
ENSCAPP00000008637	ENSCAPP00000009625	ENSCAPP00000008637	ENSCAPP00000009625	annotation not available	annotation not available	0.960
ENSCAPP00000008637	ENSCAPP00000010350	ENSCAPP00000008637	ENSCAPP00000010350	annotation not available	annotation not available	0.600
ENSCAPP00000008637	ENSCAPP00000017570	ENSCAPP00000008637	ENSCAPP00000017570	annotation not available	annotation not available	0.809
ENSCAPP00000008637	FXN	ENSCAPP00000008637	ENSCAPP00000003299	annotation not available	Frataxin.	0.998
ENSCAPP00000008637	ISCU	ENSCAPP00000008637	ENSCAPP00000013312	annotation not available	Iron-sulfur cluster assembly enzyme.	0.999
ENSCAPP00000008637	NFU1	ENSCAPP00000008637	ENSCAPP00000005112	annotation not available	NFU1 iron-sulfur cluster scaffold.	0.958
ENSCAPP00000008637	SDHB	ENSCAPP00000008637	ENSCAPP00000014177	annotation not available	Succinate dehydrogenase complex iron sulfur subunit B.	0.669
ENSCAPP00000009625	ENSCAPP00000008637	ENSCAPP00000009625	ENSCAPP00000008637	annotation not available	annotation not available	0.960
ENSCAPP00000009625	ENSCAPP00000010350	ENSCAPP00000009625	ENSCAPP00000010350	annotation not available	annotation not available	0.568
ENSCAPP00000009625	ENSCAPP00000017570	ENSCAPP00000009625	ENSCAPP00000017570	annotation not available	annotation not available	0.896
ENSCAPP00000009625	FXN	ENSCAPP00000009625	ENSCAPP00000003299	annotation not available	Frataxin.	0.881