ENSCAPP00000005137 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000005137

annotation not available (477 aa)

Predicted Functional Partners:

FMR1

0.850

ENSCAPP00000006355

0.664

RTN2

0.663

ATL3

0.655

ENSCAPP00000013295

0.650

REEP1

0.624

COPG1

0.614

ENSCAPP00000003217

0.600

ESYT1

0.557

ARL6IP1

0.507

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL6IP1	ATL3	ENSCAPP00000010184	ENSCAPP00000004685	ADP ribosylation factor like GTPase 6 interacting protein 1.	Atlastin GTPase 3.	0.529
ARL6IP1	ENSCAPP00000003217	ENSCAPP00000010184	ENSCAPP00000003217	ADP ribosylation factor like GTPase 6 interacting protein 1.	annotation not available	0.921
ARL6IP1	ENSCAPP00000005137	ENSCAPP00000010184	ENSCAPP00000005137	ADP ribosylation factor like GTPase 6 interacting protein 1.	annotation not available	0.507
ARL6IP1	ENSCAPP00000006355	ENSCAPP00000010184	ENSCAPP00000006355	ADP ribosylation factor like GTPase 6 interacting protein 1.	annotation not available	0.460
ARL6IP1	ENSCAPP00000013295	ENSCAPP00000010184	ENSCAPP00000013295	ADP ribosylation factor like GTPase 6 interacting protein 1.	annotation not available	0.665
ARL6IP1	RTN2	ENSCAPP00000010184	ENSCAPP00000015877	ADP ribosylation factor like GTPase 6 interacting protein 1.	Reticulon 2.	0.446
ATL3	ARL6IP1	ENSCAPP00000004685	ENSCAPP00000010184	Atlastin GTPase 3.	ADP ribosylation factor like GTPase 6 interacting protein 1.	0.529
ATL3	ENSCAPP00000003217	ENSCAPP00000004685	ENSCAPP00000003217	Atlastin GTPase 3.	annotation not available	0.980
ATL3	ENSCAPP00000005137	ENSCAPP00000004685	ENSCAPP00000005137	Atlastin GTPase 3.	annotation not available	0.655
ATL3	ENSCAPP00000006355	ENSCAPP00000004685	ENSCAPP00000006355	Atlastin GTPase 3.	annotation not available	0.751
ATL3	ENSCAPP00000013295	ENSCAPP00000004685	ENSCAPP00000013295	Atlastin GTPase 3.	annotation not available	0.935
ATL3	ESYT1	ENSCAPP00000004685	ENSCAPP00000000979	Atlastin GTPase 3.	Extended synaptotagmin 1.	0.924
ATL3	FMR1	ENSCAPP00000004685	ENSCAPP00000006450	Atlastin GTPase 3.	FMRP translational regulator 1.	0.564
ATL3	REEP1	ENSCAPP00000004685	ENSCAPP00000000242	Atlastin GTPase 3.	Receptor accessory protein 1.	0.771
ATL3	RTN2	ENSCAPP00000004685	ENSCAPP00000015877	Atlastin GTPase 3.	Reticulon 2.	0.777
COPG1	ENSCAPP00000005137	ENSCAPP00000004005	ENSCAPP00000005137	Coatomer protein complex subunit gamma 1.	annotation not available	0.614
ENSCAPP00000003217	ARL6IP1	ENSCAPP00000003217	ENSCAPP00000010184	annotation not available	ADP ribosylation factor like GTPase 6 interacting protein 1.	0.921
ENSCAPP00000003217	ATL3	ENSCAPP00000003217	ENSCAPP00000004685	annotation not available	Atlastin GTPase 3.	0.980
ENSCAPP00000003217	ENSCAPP00000005137	ENSCAPP00000003217	ENSCAPP00000005137	annotation not available	annotation not available	0.600
ENSCAPP00000003217	ENSCAPP00000006355	ENSCAPP00000003217	ENSCAPP00000006355	annotation not available	annotation not available	0.959