ENSCAPP00000005146 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000005146

annotation not available (125 aa)

Predicted Functional Partners:

ENSCAPP00000001550

0.989

H2BC3

0.956

H2BC18

0.956

HAT1

0.943

ENSCAPP00000001855

0.941

KDM6B

0.930

ENSCAPP00000000256

0.910

ENSCAPP00000010565

0.910

ENSCAPP00000013410

0.898

H2AZ2

0.895

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000256	ENSCAPP00000001550	ENSCAPP00000000256	ENSCAPP00000001550	annotation not available	annotation not available	0.989
ENSCAPP00000000256	ENSCAPP00000001855	ENSCAPP00000000256	ENSCAPP00000001855	annotation not available	annotation not available	0.941
ENSCAPP00000000256	ENSCAPP00000005146	ENSCAPP00000000256	ENSCAPP00000005146	annotation not available	annotation not available	0.910
ENSCAPP00000000256	ENSCAPP00000013410	ENSCAPP00000000256	ENSCAPP00000013410	annotation not available	annotation not available	0.908
ENSCAPP00000000256	H2AZ2	ENSCAPP00000000256	ENSCAPP00000015311	annotation not available	H2A.Z variant histone 2.	0.908
ENSCAPP00000000256	H2BC18	ENSCAPP00000000256	ENSCAPP00000012296	annotation not available	H2B clustered histone 18.	0.977
ENSCAPP00000000256	H2BC3	ENSCAPP00000000256	ENSCAPP00000010326	annotation not available	H2B clustered histone 3.	0.941
ENSCAPP00000000256	KDM6B	ENSCAPP00000000256	ENSCAPP00000016710	annotation not available	Lysine demethylase 6B.	0.629
ENSCAPP00000001550	ENSCAPP00000000256	ENSCAPP00000001550	ENSCAPP00000000256	annotation not available	annotation not available	0.989
ENSCAPP00000001550	ENSCAPP00000001855	ENSCAPP00000001550	ENSCAPP00000001855	annotation not available	annotation not available	0.994
ENSCAPP00000001550	ENSCAPP00000005146	ENSCAPP00000001550	ENSCAPP00000005146	annotation not available	annotation not available	0.989
ENSCAPP00000001550	ENSCAPP00000010565	ENSCAPP00000001550	ENSCAPP00000010565	annotation not available	annotation not available	0.989
ENSCAPP00000001550	ENSCAPP00000013410	ENSCAPP00000001550	ENSCAPP00000013410	annotation not available	annotation not available	0.974
ENSCAPP00000001550	H2AZ2	ENSCAPP00000001550	ENSCAPP00000015311	annotation not available	H2A.Z variant histone 2.	0.984
ENSCAPP00000001550	H2BC18	ENSCAPP00000001550	ENSCAPP00000012296	annotation not available	H2B clustered histone 18.	0.996
ENSCAPP00000001550	H2BC3	ENSCAPP00000001550	ENSCAPP00000010326	annotation not available	H2B clustered histone 3.	0.996
ENSCAPP00000001550	HAT1	ENSCAPP00000001550	ENSCAPP00000003201	annotation not available	Histone acetyltransferase 1.	0.995
ENSCAPP00000001550	KDM6B	ENSCAPP00000001550	ENSCAPP00000016710	annotation not available	Lysine demethylase 6B.	0.904
ENSCAPP00000001855	ENSCAPP00000000256	ENSCAPP00000001855	ENSCAPP00000000256	annotation not available	annotation not available	0.941
ENSCAPP00000001855	ENSCAPP00000001550	ENSCAPP00000001855	ENSCAPP00000001550	annotation not available	annotation not available	0.994