Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTF2Replication termination factor 2. (291 aa)    
Predicted Functional Partners:
TRMT1
tRNA methyltransferase 1.
    
   0.959
YARS1
tyrosyl-tRNA synthetase 1.
    
   0.875
EEF1AKMT2
EEF1A lysine methyltransferase 2.
    
   0.740
PKDREJ
Polycystin family receptor for egg jelly.
   
  
 0.658
TMCO5A
Transmembrane and coiled-coil domains 5A.
   
  
 0.651
DDI1
DNA damage inducible 1 homolog 1.
    
 
 0.635
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
      
 0.630
SPATA16
Spermatogenesis associated 16.
      
 0.575
SURF4
Surfeit 4.
      
 0.571
ENSCAPP00000003974
annotation not available
      
 0.570
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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