Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PLTPPhospholipid transfer protein. (355 aa)    
Predicted Functional Partners:
LIPC
Lipase C, hepatic type.
     
 0.976
APOB
Apolipoprotein B.
     
 0.974
LPL
Lipoprotein lipase.
     
 0.973
ENSCAPP00000015384
annotation not available
    
 0.964
LCAT
Lecithin-cholesterol acyltransferase.
     
 0.960
SEL1L3
SEL1L family member 3.
    
   0.958
PON1
Paraoxonase 1.
     
 0.955
APOM
Apolipoprotein M.
     
 0.954
VLDLR
Very low density lipoprotein receptor.
   
 
 0.953
APOA1
Apolipoprotein A1.
     
 0.952
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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