Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RIMKLARibosomal modification protein rimK like family member A. (368 aa)    
Predicted Functional Partners:
ENSCAPP00000016502
annotation not available
     
 0.952
ASPA
Aspartoacylase.
     
 0.933
FOLH1
Folate hydrolase 1.
     
 0.929
RIMKLB
Ribosomal modification protein rimK like family member B.
     
  0.911
CS
Citrate synthase.
    
 0.886
IDH3A
Isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha.
    
 0.879
NAALAD2
N-acetylated alpha-linked acidic dipeptidase 2.
     
 0.863
MDH2
Malate dehydrogenase 2.
    
 0.861
MDH1
Malate dehydrogenase 1.
    
 0.853
IDH1
Isocitrate dehydrogenase (NADP(+)) 1.
    
 0.851
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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