Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LETM1Leucine zipper and EF-hand containing transmembrane protein 1. (592 aa)    
Predicted Functional Partners:
ENSCAPP00000004283
annotation not available
    
   0.898
ENSCAPP00000016629
annotation not available
    
   0.868
UQCRC1
Ubiquinol-cytochrome c reductase core protein 1.
   
 0.793
ENSCAPP00000011394
annotation not available
      
 0.692
PCGF3
Polycomb group ring finger 3.
      
 0.689
TMEM11
Transmembrane protein 11.
      
 0.669
NSD2
Nuclear receptor binding SET domain protein 2.
      
 0.657
ENSCAPP00000006642
annotation not available
   
 0.648
OPA1
OPA1 mitochondrial dynamin like GTPase.
   
  
 0.637
SLC8B1
Solute carrier family 8 member B1.
      
 0.631
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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