STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LETM1Leucine zipper and EF-hand containing transmembrane protein 1. (592 aa)    
Predicted Functional Partners:
RPS7
Ribosomal protein S7.
    
 
 0.612
ENSCAPP00000006028
annotation not available
    
   0.611
RPS9
Ribosomal protein S9.
    
   0.611
RPL23
Ribosomal protein L23.
    
   0.611
RPS18
Ribosomal protein S18.
    
   0.611
RPL8
Ribosomal protein L8.
    
 
 0.590
RHOG
Ras homolog family member G.
    
  0.582
RPSA
Ribosomal protein SA.
   
   0.575
ENSCAPP00000017536
annotation not available
    
 
 0.571
ENSCAPP00000004779
annotation not available
    
   0.569
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.