Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ITGA6Integrin subunit alpha 6. (1011 aa)    
Predicted Functional Partners:
ITGB1
Integrin subunit beta 1.
   
 0.999
ITGB4
Integrin subunit beta 4.
   
 0.999
LAMA5
Laminin subunit alpha 5.
    
 0.996
ENSCAPP00000016591
annotation not available
   
 0.993
ITGA4
Integrin subunit alpha 4.
    
 0.992
ITGA1
Integrin subunit alpha 1.
   
 0.991
LAMA3
Laminin subunit alpha 3.
    
 0.991
ENSCAPP00000013226
annotation not available
     
  0.991
ITGAL
Integrin subunit alpha L.
     
  0.991
ITGA11
Integrin subunit alpha 11.
   
 0.991
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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