Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NR2E1Nuclear receptor subfamily 2 group E member 1. (260 aa)    
Predicted Functional Partners:
ENSCAPP00000018394
annotation not available
    
 0.953
KDM1A
Lysine demethylase 1A.
    
 0.943
HDAC2
Histone deacetylase 2.
    
 0.848
BCL11A
BAF chromatin remodeling complex subunit BCL11A.
    
 0.833
MED1
Mediator complex subunit 1.
    
  0.730
HDAC9
Histone deacetylase 9.
    
 0.690
HDAC5
Histone deacetylase 5.
    
 0.690
PSME3
Proteasome activator subunit 3.
   
  0.685
ENSCAPP00000001526
annotation not available
    
 0.653
RCVRN
Recoverin.
   
 
 0.645
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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