Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNAPC1Small nuclear RNA activating complex polypeptide 1. (336 aa)    
Predicted Functional Partners:
SNAPC4
Small nuclear RNA activating complex polypeptide 4.
    
 0.999
ENSCAPP00000013253
annotation not available
    
 0.999
POU2F1
POU class 2 homeobox 1.
    
 0.968
GTF2B
General transcription factor IIB.
    
 0.964
TBP
TATA-box binding protein.
    
 0.949
ENSCAPP00000008684
annotation not available
    
  0.923
POLR3D
RNA polymerase III subunit D.
    
 0.921
POLR2E
RNA polymerase II subunit E.
    
  0.921
GTF2A2
General transcription factor IIA subunit 2.
    
  0.920
POLR2K
RNA polymerase II subunit K.
    
  0.918
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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