WDHD1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

WDHD1

WD repeat and HMG-box DNA binding protein 1. (1092 aa)

Predicted Functional Partners:

MCM6

0.992

TIMELESS

0.992

MCM2

0.992

ENSCAPP00000013166

0.992

TIPIN

0.992

ENSCAPP00000002903

0.991

MCM3

0.990

POLE2

0.986

PRIM2

0.985

ENSCAPP00000016980

0.985

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002903	ENSCAPP00000013166	ENSCAPP00000002903	ENSCAPP00000013166	annotation not available	annotation not available	0.999
ENSCAPP00000002903	ENSCAPP00000016980	ENSCAPP00000002903	ENSCAPP00000016980	annotation not available	annotation not available	0.950
ENSCAPP00000002903	MCM2	ENSCAPP00000002903	ENSCAPP00000003876	annotation not available	Minichromosome maintenance complex component 2.	0.999
ENSCAPP00000002903	MCM3	ENSCAPP00000002903	ENSCAPP00000013580	annotation not available	Minichromosome maintenance complex component 3.	0.999
ENSCAPP00000002903	MCM6	ENSCAPP00000002903	ENSCAPP00000000980	annotation not available	Minichromosome maintenance complex component 6.	0.999
ENSCAPP00000002903	POLE2	ENSCAPP00000002903	ENSCAPP00000011902	annotation not available	DNA polymerase epsilon 2, accessory subunit.	0.985
ENSCAPP00000002903	PRIM2	ENSCAPP00000002903	ENSCAPP00000007900	annotation not available	DNA primase subunit 2.	0.992
ENSCAPP00000002903	TIMELESS	ENSCAPP00000002903	ENSCAPP00000003817	annotation not available	Timeless circadian regulator.	0.952
ENSCAPP00000002903	TIPIN	ENSCAPP00000002903	ENSCAPP00000017792	annotation not available	TIMELESS interacting protein.	0.967
ENSCAPP00000002903	WDHD1	ENSCAPP00000002903	ENSCAPP00000005270	annotation not available	WD repeat and HMG-box DNA binding protein 1.	0.991
ENSCAPP00000013166	ENSCAPP00000002903	ENSCAPP00000013166	ENSCAPP00000002903	annotation not available	annotation not available	0.999
ENSCAPP00000013166	ENSCAPP00000016980	ENSCAPP00000013166	ENSCAPP00000016980	annotation not available	annotation not available	0.643
ENSCAPP00000013166	MCM2	ENSCAPP00000013166	ENSCAPP00000003876	annotation not available	Minichromosome maintenance complex component 2.	0.999
ENSCAPP00000013166	MCM3	ENSCAPP00000013166	ENSCAPP00000013580	annotation not available	Minichromosome maintenance complex component 3.	0.999
ENSCAPP00000013166	MCM6	ENSCAPP00000013166	ENSCAPP00000000980	annotation not available	Minichromosome maintenance complex component 6.	0.999
ENSCAPP00000013166	POLE2	ENSCAPP00000013166	ENSCAPP00000011902	annotation not available	DNA polymerase epsilon 2, accessory subunit.	0.992
ENSCAPP00000013166	PRIM2	ENSCAPP00000013166	ENSCAPP00000007900	annotation not available	DNA primase subunit 2.	0.988
ENSCAPP00000013166	TIMELESS	ENSCAPP00000013166	ENSCAPP00000003817	annotation not available	Timeless circadian regulator.	0.966
ENSCAPP00000013166	TIPIN	ENSCAPP00000013166	ENSCAPP00000017792	annotation not available	TIMELESS interacting protein.	0.953
ENSCAPP00000013166	WDHD1	ENSCAPP00000013166	ENSCAPP00000005270	annotation not available	WD repeat and HMG-box DNA binding protein 1.	0.992