ENSCAPP00000005276 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000005276

annotation not available (678 aa)

Predicted Functional Partners:

KIF23

0.955

RAB8A

0.932

ENSCAPP00000013152

0.899

RAB8B

0.791

ENSCAPP00000005688

0.763

FANCI

0.708

PHF2

0.666

RBBP6

0.663

SLC16A9

0.662

RACGAP1

0.613

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000005276	ENSCAPP00000005688	ENSCAPP00000005276	ENSCAPP00000005688	annotation not available	annotation not available	0.763
ENSCAPP00000005276	ENSCAPP00000013152	ENSCAPP00000005276	ENSCAPP00000013152	annotation not available	annotation not available	0.899
ENSCAPP00000005276	FANCI	ENSCAPP00000005276	ENSCAPP00000010903	annotation not available	FA complementation group I.	0.708
ENSCAPP00000005276	KIF23	ENSCAPP00000005276	ENSCAPP00000009192	annotation not available	Kinesin family member 23.	0.955
ENSCAPP00000005276	PHF2	ENSCAPP00000005276	ENSCAPP00000018696	annotation not available	PHD finger protein 2.	0.666
ENSCAPP00000005276	RAB8A	ENSCAPP00000005276	ENSCAPP00000005929	annotation not available	RAB8A, member RAS oncogene family.	0.932
ENSCAPP00000005276	RAB8B	ENSCAPP00000005276	ENSCAPP00000008061	annotation not available	RAB8B, member RAS oncogene family.	0.791
ENSCAPP00000005276	RACGAP1	ENSCAPP00000005276	ENSCAPP00000011341	annotation not available	Rac GTPase activating protein 1.	0.613
ENSCAPP00000005276	RBBP6	ENSCAPP00000005276	ENSCAPP00000011316	annotation not available	RB binding protein 6, ubiquitin ligase.	0.663
ENSCAPP00000005276	SLC16A9	ENSCAPP00000005276	ENSCAPP00000001145	annotation not available	Solute carrier family 16 member 9.	0.662
ENSCAPP00000005688	ENSCAPP00000005276	ENSCAPP00000005688	ENSCAPP00000005276	annotation not available	annotation not available	0.763
ENSCAPP00000005688	ENSCAPP00000013152	ENSCAPP00000005688	ENSCAPP00000013152	annotation not available	annotation not available	0.605
ENSCAPP00000005688	RAB8A	ENSCAPP00000005688	ENSCAPP00000005929	annotation not available	RAB8A, member RAS oncogene family.	0.915
ENSCAPP00000005688	RAB8B	ENSCAPP00000005688	ENSCAPP00000008061	annotation not available	RAB8B, member RAS oncogene family.	0.972
ENSCAPP00000013152	ENSCAPP00000005276	ENSCAPP00000013152	ENSCAPP00000005276	annotation not available	annotation not available	0.899
ENSCAPP00000013152	ENSCAPP00000005688	ENSCAPP00000013152	ENSCAPP00000005688	annotation not available	annotation not available	0.605
ENSCAPP00000013152	FANCI	ENSCAPP00000013152	ENSCAPP00000010903	annotation not available	FA complementation group I.	0.552
ENSCAPP00000013152	KIF23	ENSCAPP00000013152	ENSCAPP00000009192	annotation not available	Kinesin family member 23.	0.613
ENSCAPP00000013152	RAB8A	ENSCAPP00000013152	ENSCAPP00000005929	annotation not available	RAB8A, member RAS oncogene family.	0.651
ENSCAPP00000013152	RAB8B	ENSCAPP00000013152	ENSCAPP00000008061	annotation not available	RAB8B, member RAS oncogene family.	0.651