Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CWC27CWC27 spliceosome associated cyclophilin. (314 aa)    
Predicted Functional Partners:
DHX16
DEAH-box helicase 16.
   
 0.996
PRPF8
pre-mRNA processing factor 8.
   
 0.995
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.995
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
  
 0.994
SF3B2
Splicing factor 3b subunit 2.
    
 0.993
BUD13
BUD13 homolog.
    
 0.993
SF3B3
Splicing factor 3b subunit 3.
    
 0.992
SNIP1
Smad nuclear interacting protein 1.
    
 0.992
SF3A1
Splicing factor 3a subunit 1.
    
 0.992
SF3A3
Splicing factor 3a subunit 3.
   
 0.989
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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