USP2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

USP2

Ubiquitin specific peptidase 2. (611 aa)

Predicted Functional Partners:

RIPK1

0.972

UBA52

0.900

ENSCAPP00000010366

0.900

TRAF2

0.891

TRAF6

0.886

MDM4

0.882

ENSCAPP00000000492

0.877

ENSCAPP00000004155

0.877

ENSCAPP00000014462

0.877

ENSCAPP00000001717

0.870

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000492	ENSCAPP00000001717	ENSCAPP00000000492	ENSCAPP00000001717	annotation not available	annotation not available	0.429
ENSCAPP00000000492	ENSCAPP00000010366	ENSCAPP00000000492	ENSCAPP00000010366	annotation not available	annotation not available	0.991
ENSCAPP00000000492	MDM4	ENSCAPP00000000492	ENSCAPP00000010040	annotation not available	MDM4 regulator of p53.	0.792
ENSCAPP00000000492	RIPK1	ENSCAPP00000000492	ENSCAPP00000008355	annotation not available	Receptor interacting serine/threonine kinase 1.	0.754
ENSCAPP00000000492	TRAF2	ENSCAPP00000000492	ENSCAPP00000016857	annotation not available	TNF receptor associated factor 2.	0.934
ENSCAPP00000000492	TRAF6	ENSCAPP00000000492	ENSCAPP00000008546	annotation not available	TNF receptor associated factor 6.	0.956
ENSCAPP00000000492	UBA52	ENSCAPP00000000492	ENSCAPP00000005037	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.991
ENSCAPP00000000492	USP2	ENSCAPP00000000492	ENSCAPP00000005319	annotation not available	Ubiquitin specific peptidase 2.	0.877
ENSCAPP00000001717	ENSCAPP00000000492	ENSCAPP00000001717	ENSCAPP00000000492	annotation not available	annotation not available	0.429
ENSCAPP00000001717	ENSCAPP00000004155	ENSCAPP00000001717	ENSCAPP00000004155	annotation not available	annotation not available	0.429
ENSCAPP00000001717	ENSCAPP00000010366	ENSCAPP00000001717	ENSCAPP00000010366	annotation not available	annotation not available	0.422
ENSCAPP00000001717	ENSCAPP00000014462	ENSCAPP00000001717	ENSCAPP00000014462	annotation not available	annotation not available	0.429
ENSCAPP00000001717	UBA52	ENSCAPP00000001717	ENSCAPP00000005037	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.422
ENSCAPP00000001717	USP2	ENSCAPP00000001717	ENSCAPP00000005319	annotation not available	Ubiquitin specific peptidase 2.	0.870
ENSCAPP00000004155	ENSCAPP00000001717	ENSCAPP00000004155	ENSCAPP00000001717	annotation not available	annotation not available	0.429
ENSCAPP00000004155	ENSCAPP00000010366	ENSCAPP00000004155	ENSCAPP00000010366	annotation not available	annotation not available	0.991
ENSCAPP00000004155	MDM4	ENSCAPP00000004155	ENSCAPP00000010040	annotation not available	MDM4 regulator of p53.	0.792
ENSCAPP00000004155	RIPK1	ENSCAPP00000004155	ENSCAPP00000008355	annotation not available	Receptor interacting serine/threonine kinase 1.	0.754
ENSCAPP00000004155	TRAF2	ENSCAPP00000004155	ENSCAPP00000016857	annotation not available	TNF receptor associated factor 2.	0.934
ENSCAPP00000004155	TRAF6	ENSCAPP00000004155	ENSCAPP00000008546	annotation not available	TNF receptor associated factor 6.	0.956