GLB1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLB1

Galactosidase beta 1. (549 aa)

Predicted Functional Partners:

NEU1

0.998

CTSA

0.992

NAGA

0.977

GALNS

0.976

ARSA

0.960

GUSB

0.960

ENSCAPP00000004538

0.955

GBA

0.951

LCT

0.951

ENSCAPP00000005689

0.945

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARSA	ENSCAPP00000004538	ENSCAPP00000011189	ENSCAPP00000004538	Arylsulfatase A.	annotation not available	0.937
ARSA	ENSCAPP00000005689	ENSCAPP00000011189	ENSCAPP00000005689	Arylsulfatase A.	annotation not available	0.475
ARSA	GALNS	ENSCAPP00000011189	ENSCAPP00000012507	Arylsulfatase A.	Galactosamine (N-acetyl)-6-sulfatase.	0.982
ARSA	GBA	ENSCAPP00000011189	ENSCAPP00000001373	Arylsulfatase A.	Glucosylceramidase beta.	0.608
ARSA	GLB1	ENSCAPP00000011189	ENSCAPP00000005320	Arylsulfatase A.	Galactosidase beta 1.	0.960
ARSA	GUSB	ENSCAPP00000011189	ENSCAPP00000017902	Arylsulfatase A.	Glucuronidase beta.	0.731
ARSA	NAGA	ENSCAPP00000011189	ENSCAPP00000017004	Arylsulfatase A.	alpha-N-acetylgalactosaminidase.	0.924
ARSA	NEU1	ENSCAPP00000011189	ENSCAPP00000011137	Arylsulfatase A.	Neuraminidase 1.	0.927
CTSA	ENSCAPP00000004538	ENSCAPP00000008367	ENSCAPP00000004538	Cathepsin A.	annotation not available	0.478
CTSA	ENSCAPP00000005689	ENSCAPP00000008367	ENSCAPP00000005689	Cathepsin A.	annotation not available	0.432
CTSA	GALNS	ENSCAPP00000008367	ENSCAPP00000012507	Cathepsin A.	Galactosamine (N-acetyl)-6-sulfatase.	0.440
CTSA	GLB1	ENSCAPP00000008367	ENSCAPP00000005320	Cathepsin A.	Galactosidase beta 1.	0.992
CTSA	NEU1	ENSCAPP00000008367	ENSCAPP00000011137	Cathepsin A.	Neuraminidase 1.	0.992
ENSCAPP00000004538	ARSA	ENSCAPP00000004538	ENSCAPP00000011189	annotation not available	Arylsulfatase A.	0.937
ENSCAPP00000004538	CTSA	ENSCAPP00000004538	ENSCAPP00000008367	annotation not available	Cathepsin A.	0.478
ENSCAPP00000004538	ENSCAPP00000005689	ENSCAPP00000004538	ENSCAPP00000005689	annotation not available	annotation not available	0.940
ENSCAPP00000004538	GALNS	ENSCAPP00000004538	ENSCAPP00000012507	annotation not available	Galactosamine (N-acetyl)-6-sulfatase.	0.537
ENSCAPP00000004538	GBA	ENSCAPP00000004538	ENSCAPP00000001373	annotation not available	Glucosylceramidase beta.	0.406
ENSCAPP00000004538	GLB1	ENSCAPP00000004538	ENSCAPP00000005320	annotation not available	Galactosidase beta 1.	0.955
ENSCAPP00000004538	GUSB	ENSCAPP00000004538	ENSCAPP00000017902	annotation not available	Glucuronidase beta.	0.824