ENSCAPP00000005342 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000005342

annotation not available (349 aa)

Predicted Functional Partners:

ENSCAPP00000016562

0.999

CUL5

0.998

ELOC

0.992

ENSCAPP00000010874

0.992

ENSCAPP00000001066

0.990

CUL1

0.990

UBE2C

0.982

CDC34

0.981

ENSCAPP00000004508

0.979

ASB7

0.978

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB7	CUL5	ENSCAPP00000013727	ENSCAPP00000012653	Ankyrin repeat and SOCS box containing 7.	Cullin 5.	0.995
ASB7	ELOC	ENSCAPP00000013727	ENSCAPP00000003711	Ankyrin repeat and SOCS box containing 7.	Elongin C.	0.953
ASB7	ENSCAPP00000001066	ENSCAPP00000013727	ENSCAPP00000001066	Ankyrin repeat and SOCS box containing 7.	annotation not available	0.496
ASB7	ENSCAPP00000005342	ENSCAPP00000013727	ENSCAPP00000005342	Ankyrin repeat and SOCS box containing 7.	annotation not available	0.978
ASB7	ENSCAPP00000010874	ENSCAPP00000013727	ENSCAPP00000010874	Ankyrin repeat and SOCS box containing 7.	annotation not available	0.953
ASB7	ENSCAPP00000016562	ENSCAPP00000013727	ENSCAPP00000016562	Ankyrin repeat and SOCS box containing 7.	annotation not available	0.980
ASB7	UBE2C	ENSCAPP00000013727	ENSCAPP00000008543	Ankyrin repeat and SOCS box containing 7.	Ubiquitin conjugating enzyme E2 C.	0.469
CDC34	CUL1	ENSCAPP00000009640	ENSCAPP00000006453	Cell division cycle 34.	Cullin 1.	0.989
CDC34	ELOC	ENSCAPP00000009640	ENSCAPP00000003711	Cell division cycle 34.	Elongin C.	0.716
CDC34	ENSCAPP00000001066	ENSCAPP00000009640	ENSCAPP00000001066	Cell division cycle 34.	annotation not available	0.575
CDC34	ENSCAPP00000004508	ENSCAPP00000009640	ENSCAPP00000004508	Cell division cycle 34.	annotation not available	0.641
CDC34	ENSCAPP00000005342	ENSCAPP00000009640	ENSCAPP00000005342	Cell division cycle 34.	annotation not available	0.981
CDC34	ENSCAPP00000010874	ENSCAPP00000009640	ENSCAPP00000010874	Cell division cycle 34.	annotation not available	0.716
CDC34	ENSCAPP00000016562	ENSCAPP00000009640	ENSCAPP00000016562	Cell division cycle 34.	annotation not available	0.832
CDC34	UBE2C	ENSCAPP00000009640	ENSCAPP00000008543	Cell division cycle 34.	Ubiquitin conjugating enzyme E2 C.	0.546
CUL1	CDC34	ENSCAPP00000006453	ENSCAPP00000009640	Cullin 1.	Cell division cycle 34.	0.989
CUL1	CUL5	ENSCAPP00000006453	ENSCAPP00000012653	Cullin 1.	Cullin 5.	0.571
CUL1	ELOC	ENSCAPP00000006453	ENSCAPP00000003711	Cullin 1.	Elongin C.	0.879
CUL1	ENSCAPP00000001066	ENSCAPP00000006453	ENSCAPP00000001066	Cullin 1.	annotation not available	0.950
CUL1	ENSCAPP00000004508	ENSCAPP00000006453	ENSCAPP00000004508	Cullin 1.	annotation not available	0.650