NAV2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

NAV2

Neuron navigator 2. (2297 aa)

Predicted Functional Partners:

VPS9D1

0.781

MAP2K4

0.616

CSPG5

0.583

TLN1

0.568

TLN2

0.568

ENSCAPP00000012094

0.553

CLMN

0.537

ENSCAPP00000001392

0.531

ENSCAPP00000000244

0.519

PAK2

0.519

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLMN	NAV2	ENSCAPP00000005212	ENSCAPP00000005355	Calmin.	Neuron navigator 2.	0.537
CSPG5	NAV2	ENSCAPP00000007479	ENSCAPP00000005355	Chondroitin sulfate proteoglycan 5.	Neuron navigator 2.	0.583
ENSCAPP00000000244	ENSCAPP00000001392	ENSCAPP00000000244	ENSCAPP00000001392	annotation not available	annotation not available	0.467
ENSCAPP00000000244	NAV2	ENSCAPP00000000244	ENSCAPP00000005355	annotation not available	Neuron navigator 2.	0.519
ENSCAPP00000000244	PAK2	ENSCAPP00000000244	ENSCAPP00000008198	annotation not available	P21 (RAC1) activated kinase 2.	0.999
ENSCAPP00000001392	ENSCAPP00000000244	ENSCAPP00000001392	ENSCAPP00000000244	annotation not available	annotation not available	0.467
ENSCAPP00000001392	NAV2	ENSCAPP00000001392	ENSCAPP00000005355	annotation not available	Neuron navigator 2.	0.531
ENSCAPP00000001392	PAK2	ENSCAPP00000001392	ENSCAPP00000008198	annotation not available	P21 (RAC1) activated kinase 2.	0.467
ENSCAPP00000012094	NAV2	ENSCAPP00000012094	ENSCAPP00000005355	annotation not available	Neuron navigator 2.	0.553
MAP2K4	NAV2	ENSCAPP00000018678	ENSCAPP00000005355	Mitogen-activated protein kinase kinase 4.	Neuron navigator 2.	0.616
NAV2	CLMN	ENSCAPP00000005355	ENSCAPP00000005212	Neuron navigator 2.	Calmin.	0.537
NAV2	CSPG5	ENSCAPP00000005355	ENSCAPP00000007479	Neuron navigator 2.	Chondroitin sulfate proteoglycan 5.	0.583
NAV2	ENSCAPP00000000244	ENSCAPP00000005355	ENSCAPP00000000244	Neuron navigator 2.	annotation not available	0.519
NAV2	ENSCAPP00000001392	ENSCAPP00000005355	ENSCAPP00000001392	Neuron navigator 2.	annotation not available	0.531
NAV2	ENSCAPP00000012094	ENSCAPP00000005355	ENSCAPP00000012094	Neuron navigator 2.	annotation not available	0.553
NAV2	MAP2K4	ENSCAPP00000005355	ENSCAPP00000018678	Neuron navigator 2.	Mitogen-activated protein kinase kinase 4.	0.616
NAV2	PAK2	ENSCAPP00000005355	ENSCAPP00000008198	Neuron navigator 2.	P21 (RAC1) activated kinase 2.	0.519
NAV2	TLN1	ENSCAPP00000005355	ENSCAPP00000000944	Neuron navigator 2.	Talin 1.	0.568
NAV2	TLN2	ENSCAPP00000005355	ENSCAPP00000007371	Neuron navigator 2.	Talin 2.	0.568
NAV2	VPS9D1	ENSCAPP00000005355	ENSCAPP00000015361	Neuron navigator 2.	VPS9 domain containing 1.	0.781