STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARMC4Armadillo repeat containing 4. (941 aa)    
Predicted Functional Partners:
TTC25
Tetratricopeptide repeat domain 25.
  
 
 0.906
ENSCAPP00000006984
annotation not available
  
 0.873
ENSCAPP00000015156
annotation not available
   
 0.873
CCDC151
Coiled-coil domain containing 151.
    
 0.871
ENSCAPP00000007846
annotation not available
   
 0.788
C9orf116
Chromosome 9 open reading frame 116.
   
 
 0.780
WDR90
WD repeat domain 90.
    
   0.775
DNALI1
Dynein axonemal light intermediate chain 1.
   
 
 0.764
RIBC2
RIB43A domain with coiled-coils 2.
   
 
 0.759
PACRG
Parkin coregulated.
   
 
 0.745
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.