ENSCAPP00000005369 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000005369

annotation not available (467 aa)

Predicted Functional Partners:

TP53

0.766

RAB14

0.699

CNTRL

0.558

ENSCAPP00000005436

0.544

ENSCAPP00000006409

0.544

RAB2B

0.539

RAB2A

0.539

ENSCAPP00000004250

0.534

ENSCAPP00000006029

0.534

GAPDHS

0.521

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTRL	ENSCAPP00000005369	ENSCAPP00000003886	ENSCAPP00000005369	Centriolin.	annotation not available	0.558
CNTRL	ENSCAPP00000005436	ENSCAPP00000003886	ENSCAPP00000005436	Centriolin.	annotation not available	0.490
CNTRL	ENSCAPP00000006409	ENSCAPP00000003886	ENSCAPP00000006409	Centriolin.	annotation not available	0.475
ENSCAPP00000004250	ENSCAPP00000005369	ENSCAPP00000004250	ENSCAPP00000005369	annotation not available	annotation not available	0.534
ENSCAPP00000004250	GAPDHS	ENSCAPP00000004250	ENSCAPP00000010387	annotation not available	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	0.885
ENSCAPP00000004250	TP53	ENSCAPP00000004250	ENSCAPP00000017521	annotation not available	Tumor protein p53.	0.712
ENSCAPP00000005369	CNTRL	ENSCAPP00000005369	ENSCAPP00000003886	annotation not available	Centriolin.	0.558
ENSCAPP00000005369	ENSCAPP00000004250	ENSCAPP00000005369	ENSCAPP00000004250	annotation not available	annotation not available	0.534
ENSCAPP00000005369	ENSCAPP00000005436	ENSCAPP00000005369	ENSCAPP00000005436	annotation not available	annotation not available	0.544
ENSCAPP00000005369	ENSCAPP00000006029	ENSCAPP00000005369	ENSCAPP00000006029	annotation not available	annotation not available	0.534
ENSCAPP00000005369	ENSCAPP00000006409	ENSCAPP00000005369	ENSCAPP00000006409	annotation not available	annotation not available	0.544
ENSCAPP00000005369	GAPDHS	ENSCAPP00000005369	ENSCAPP00000010387	annotation not available	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic.	0.521
ENSCAPP00000005369	RAB14	ENSCAPP00000005369	ENSCAPP00000017647	annotation not available	RAB14, member RAS oncogene family.	0.699
ENSCAPP00000005369	RAB2A	ENSCAPP00000005369	ENSCAPP00000007948	annotation not available	RAB2A, member RAS oncogene family.	0.539
ENSCAPP00000005369	RAB2B	ENSCAPP00000005369	ENSCAPP00000004925	annotation not available	RAB2B, member RAS oncogene family.	0.539
ENSCAPP00000005369	TP53	ENSCAPP00000005369	ENSCAPP00000017521	annotation not available	Tumor protein p53.	0.766
ENSCAPP00000005436	CNTRL	ENSCAPP00000005436	ENSCAPP00000003886	annotation not available	Centriolin.	0.490
ENSCAPP00000005436	ENSCAPP00000005369	ENSCAPP00000005436	ENSCAPP00000005369	annotation not available	annotation not available	0.544
ENSCAPP00000005436	ENSCAPP00000006409	ENSCAPP00000005436	ENSCAPP00000006409	annotation not available	annotation not available	0.864
ENSCAPP00000005436	RAB14	ENSCAPP00000005436	ENSCAPP00000017647	annotation not available	RAB14, member RAS oncogene family.	0.575