Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PLEKHA1Pleckstrin homology domain containing A1. (336 aa)    
Predicted Functional Partners:
ENSCAPP00000004291
annotation not available
     
  0.898
USE1
Unconventional SNARE in the ER 1.
    
 0.797
STX18
Syntaxin 18.
    
 0.797
RINT1
RAD50 interactor 1.
    
 0.787
ZW10
Zw10 kinetochore protein.
    
 0.773
ENSCAPP00000011016
annotation not available
    
 0.638
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene).
    
 0.619
SEC22A
SEC22 homolog A, vesicle trafficking protein.
    
 0.619
SEC22C
SEC22 homolog C, vesicle trafficking protein.
    
 0.619
TSC2
TSC complex subunit 2.
    
 0.597
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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