NET1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

NET1

Neuroepithelial cell transforming 1. (588 aa)

Predicted Functional Partners:

MAGI1

0.959

ENSCAPP00000006439

0.858

ENSCAPP00000012909

0.858

ENSCAPP00000012860

0.850

SNX27

0.804

ENSCAPP00000012514

0.803

ENSCAPP00000017226

0.803

DLG1

0.803

RND1

0.777

ENSCAPP00000006795

0.777

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLG1	ENSCAPP00000006439	ENSCAPP00000018332	ENSCAPP00000006439	Discs large MAGUK scaffold protein 1.	annotation not available	0.477
DLG1	ENSCAPP00000006795	ENSCAPP00000018332	ENSCAPP00000006795	Discs large MAGUK scaffold protein 1.	annotation not available	0.477
DLG1	ENSCAPP00000012909	ENSCAPP00000018332	ENSCAPP00000012909	Discs large MAGUK scaffold protein 1.	annotation not available	0.477
DLG1	NET1	ENSCAPP00000018332	ENSCAPP00000005392	Discs large MAGUK scaffold protein 1.	Neuroepithelial cell transforming 1.	0.803
DLG1	RND1	ENSCAPP00000018332	ENSCAPP00000002218	Discs large MAGUK scaffold protein 1.	Rho family GTPase 1.	0.477
ENSCAPP00000006439	DLG1	ENSCAPP00000006439	ENSCAPP00000018332	annotation not available	Discs large MAGUK scaffold protein 1.	0.477
ENSCAPP00000006439	ENSCAPP00000006795	ENSCAPP00000006439	ENSCAPP00000006795	annotation not available	annotation not available	0.781
ENSCAPP00000006439	ENSCAPP00000012514	ENSCAPP00000006439	ENSCAPP00000012514	annotation not available	annotation not available	0.477
ENSCAPP00000006439	ENSCAPP00000017226	ENSCAPP00000006439	ENSCAPP00000017226	annotation not available	annotation not available	0.477
ENSCAPP00000006439	NET1	ENSCAPP00000006439	ENSCAPP00000005392	annotation not available	Neuroepithelial cell transforming 1.	0.858
ENSCAPP00000006439	RND1	ENSCAPP00000006439	ENSCAPP00000002218	annotation not available	Rho family GTPase 1.	0.855
ENSCAPP00000006795	DLG1	ENSCAPP00000006795	ENSCAPP00000018332	annotation not available	Discs large MAGUK scaffold protein 1.	0.477
ENSCAPP00000006795	ENSCAPP00000006439	ENSCAPP00000006795	ENSCAPP00000006439	annotation not available	annotation not available	0.781
ENSCAPP00000006795	ENSCAPP00000012514	ENSCAPP00000006795	ENSCAPP00000012514	annotation not available	annotation not available	0.477
ENSCAPP00000006795	ENSCAPP00000012909	ENSCAPP00000006795	ENSCAPP00000012909	annotation not available	annotation not available	0.788
ENSCAPP00000006795	ENSCAPP00000017226	ENSCAPP00000006795	ENSCAPP00000017226	annotation not available	annotation not available	0.477
ENSCAPP00000006795	NET1	ENSCAPP00000006795	ENSCAPP00000005392	annotation not available	Neuroepithelial cell transforming 1.	0.777
ENSCAPP00000012514	ENSCAPP00000006439	ENSCAPP00000012514	ENSCAPP00000006439	annotation not available	annotation not available	0.477
ENSCAPP00000012514	ENSCAPP00000006795	ENSCAPP00000012514	ENSCAPP00000006795	annotation not available	annotation not available	0.477
ENSCAPP00000012514	ENSCAPP00000012909	ENSCAPP00000012514	ENSCAPP00000012909	annotation not available	annotation not available	0.477