Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP19Matrix metallopeptidase 19. (454 aa)    
Predicted Functional Partners:
NID1
Nidogen 1.
     
 0.757
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.711
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.687
ENSCAPP00000002614
annotation not available
     
  0.677
UBE2V1
Ubiquitin conjugating enzyme E2 V1.
     
  0.677
MYO1E
Myosin IE.
   
  
 0.664
FURIN
Furin, paired basic amino acid cleaving enzyme.
    
 0.662
PCSK4
Proprotein convertase subtilisin/kexin type 4.
    
 0.597
HBEGF
Heparin binding EGF like growth factor.
    
 0.592
PLA2G4A
Phospholipase A2 group IVA.
     
  0.589
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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