MID1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MID1

Midline 1. (619 aa)

Predicted Functional Partners:

ENSCAPP00000010697

0.954

ENSCAPP00000004272

0.880

ENSCAPP00000000972

0.876

ENSCAPP00000008606

0.876

UBE2D4

0.829

ENSCAPP00000011901

0.789

SYT17

0.706

PPP2CB

0.671

PPP2CA

0.671

EPN3

0.670

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000972	ENSCAPP00000011901	ENSCAPP00000000972	ENSCAPP00000011901	annotation not available	annotation not available	0.485
ENSCAPP00000000972	MID1	ENSCAPP00000000972	ENSCAPP00000005417	annotation not available	Midline 1.	0.876
ENSCAPP00000000972	UBE2D4	ENSCAPP00000000972	ENSCAPP00000014980	annotation not available	Ubiquitin conjugating enzyme E2 D4 (putative).	0.991
ENSCAPP00000004272	ENSCAPP00000010697	ENSCAPP00000004272	ENSCAPP00000010697	annotation not available	annotation not available	0.978
ENSCAPP00000004272	MID1	ENSCAPP00000004272	ENSCAPP00000005417	annotation not available	Midline 1.	0.880
ENSCAPP00000004272	PPP2CA	ENSCAPP00000004272	ENSCAPP00000018485	annotation not available	Protein phosphatase 2 catalytic subunit alpha.	0.983
ENSCAPP00000004272	PPP2CB	ENSCAPP00000004272	ENSCAPP00000015781	annotation not available	Protein phosphatase 2 catalytic subunit beta.	0.983
ENSCAPP00000008606	ENSCAPP00000011901	ENSCAPP00000008606	ENSCAPP00000011901	annotation not available	annotation not available	0.485
ENSCAPP00000008606	MID1	ENSCAPP00000008606	ENSCAPP00000005417	annotation not available	Midline 1.	0.876
ENSCAPP00000008606	PPP2CA	ENSCAPP00000008606	ENSCAPP00000018485	annotation not available	Protein phosphatase 2 catalytic subunit alpha.	0.434
ENSCAPP00000008606	PPP2CB	ENSCAPP00000008606	ENSCAPP00000015781	annotation not available	Protein phosphatase 2 catalytic subunit beta.	0.431
ENSCAPP00000008606	UBE2D4	ENSCAPP00000008606	ENSCAPP00000014980	annotation not available	Ubiquitin conjugating enzyme E2 D4 (putative).	0.991
ENSCAPP00000010697	ENSCAPP00000004272	ENSCAPP00000010697	ENSCAPP00000004272	annotation not available	annotation not available	0.978
ENSCAPP00000010697	MID1	ENSCAPP00000010697	ENSCAPP00000005417	annotation not available	Midline 1.	0.954
ENSCAPP00000010697	PPP2CA	ENSCAPP00000010697	ENSCAPP00000018485	annotation not available	Protein phosphatase 2 catalytic subunit alpha.	0.989
ENSCAPP00000010697	PPP2CB	ENSCAPP00000010697	ENSCAPP00000015781	annotation not available	Protein phosphatase 2 catalytic subunit beta.	0.989
ENSCAPP00000011901	ENSCAPP00000000972	ENSCAPP00000011901	ENSCAPP00000000972	annotation not available	annotation not available	0.485
ENSCAPP00000011901	ENSCAPP00000008606	ENSCAPP00000011901	ENSCAPP00000008606	annotation not available	annotation not available	0.485
ENSCAPP00000011901	MID1	ENSCAPP00000011901	ENSCAPP00000005417	annotation not available	Midline 1.	0.789
ENSCAPP00000011901	SYT17	ENSCAPP00000011901	ENSCAPP00000017648	annotation not available	Synaptotagmin 17.	0.400