STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
P3H1Prolyl 3-hydroxylase 1. (615 aa)    
Predicted Functional Partners:
ENSCAPP00000011777
annotation not available
   
 0.995
WDR19
WD repeat domain 19.
      
 0.935
CEP290
Centrosomal protein 290.
      
 0.912
ENSCAPP00000000528
annotation not available
    
   0.896
ENSCAPP00000010318
annotation not available
      
 0.884
NUDT21
Nudix hydrolase 21.
    
 
 0.847
COL1A2
Collagen type I alpha 2 chain.
    
 0.833
ENSCAPP00000008726
annotation not available
    
   0.799
ENSCAPP00000016172
annotation not available
    
 0.791
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 
 0.765
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.