Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005482annotation not available (171 aa)    
Predicted Functional Partners:
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.963
ENSCAPP00000001190
annotation not available
    
 0.934
MCM3AP
Minichromosome maintenance complex component 3 associated protein.
    
 0.922
PCID2
PCI domain containing 2.
    
 0.920
POC5
POC5 centriolar protein.
    
 
 0.915
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
    
 0.912
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.905
ENSCAPP00000010526
annotation not available
    
 0.885
ERCC4
ERCC excision repair 4, endonuclease catalytic subunit.
   
 0.855
WDR90
WD repeat domain 90.
    
 0.849
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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