STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMAN1Lectin, mannose binding 1. (366 aa)    
Predicted Functional Partners:
MCFD2
Multiple coagulation factor deficiency 2.
   
 0.994
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene).
   
 0.860
ENSCAPP00000008248
annotation not available
   
 
 0.859
ENSCAPP00000001689
annotation not available
   
 0.845
ENSCAPP00000010370
annotation not available
     
 0.840
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 
 0.809
TMED10
Transmembrane p24 trafficking protein 10.
   
 0.809
SEC16A
SEC16 homolog A, endoplasmic reticulum export factor.
     
 0.803
PREB
Prolactin regulatory element binding.
   
 0.779
STX5
Syntaxin 5.
    
 0.778
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.