Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STRA6Stimulated by retinoic acid 6. (609 aa)    
Predicted Functional Partners:
RBP4
Retinol binding protein 4.
     
 0.973
RBP1
Retinol binding protein 1.
     
 0.905
TTR
Transthyretin.
   
 0.843
RARS1
arginyl-tRNA synthetase 1.
   
 
 0.707
CYP26B1
Cytochrome P450 family 26 subfamily B member 1.
    
 0.626
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.625
RARA
Retinoic acid receptor alpha.
    
 0.589
EPHA1
EPH receptor A1.
    
 0.586
PDZRN4
PDZ domain containing ring finger 4.
    
 0.569
ABCB6
ATP binding cassette subfamily B member 6 (Langereis blood group).
    
 
 0.562
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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