GPATCH2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

GPATCH2

G-patch domain containing 2. (509 aa)

Predicted Functional Partners:

CSNK2A2

0.975

DHX15

0.940

RRP15

0.931

NOL6

0.926

BYSL

0.925

KRR1

0.924

DDX18

0.923

NOP14

0.923

UTP6

0.923

ENSCAPP00000007313

0.894

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BYSL	CSNK2A2	ENSCAPP00000015993	ENSCAPP00000011456	Bystin like.	Casein kinase 2 alpha 2.	0.624
BYSL	DDX18	ENSCAPP00000015993	ENSCAPP00000001910	Bystin like.	DEAD-box helicase 18.	0.992
BYSL	DHX15	ENSCAPP00000015993	ENSCAPP00000005798	Bystin like.	DEAH-box helicase 15.	0.993
BYSL	ENSCAPP00000007313	ENSCAPP00000015993	ENSCAPP00000007313	Bystin like.	annotation not available	0.609
BYSL	GPATCH2	ENSCAPP00000015993	ENSCAPP00000005538	Bystin like.	G-patch domain containing 2.	0.925
BYSL	KRR1	ENSCAPP00000015993	ENSCAPP00000005454	Bystin like.	KRR1 small subunit processome component homolog.	0.998
BYSL	NOL6	ENSCAPP00000015993	ENSCAPP00000010331	Bystin like.	Nucleolar protein 6.	0.996
BYSL	NOP14	ENSCAPP00000015993	ENSCAPP00000006315	Bystin like.	NOP14 nucleolar protein.	0.999
BYSL	RRP15	ENSCAPP00000015993	ENSCAPP00000012320	Bystin like.	Ribosomal RNA processing 15 homolog.	0.742
BYSL	UTP6	ENSCAPP00000015993	ENSCAPP00000018118	Bystin like.	UTP6 small subunit processome component.	0.996
CSNK2A2	BYSL	ENSCAPP00000011456	ENSCAPP00000015993	Casein kinase 2 alpha 2.	Bystin like.	0.624
CSNK2A2	DDX18	ENSCAPP00000011456	ENSCAPP00000001910	Casein kinase 2 alpha 2.	DEAD-box helicase 18.	0.497
CSNK2A2	DHX15	ENSCAPP00000011456	ENSCAPP00000005798	Casein kinase 2 alpha 2.	DEAH-box helicase 15.	0.510
CSNK2A2	ENSCAPP00000007313	ENSCAPP00000011456	ENSCAPP00000007313	Casein kinase 2 alpha 2.	annotation not available	0.998
CSNK2A2	GPATCH2	ENSCAPP00000011456	ENSCAPP00000005538	Casein kinase 2 alpha 2.	G-patch domain containing 2.	0.975
CSNK2A2	KRR1	ENSCAPP00000011456	ENSCAPP00000005454	Casein kinase 2 alpha 2.	KRR1 small subunit processome component homolog.	0.798
CSNK2A2	NOL6	ENSCAPP00000011456	ENSCAPP00000010331	Casein kinase 2 alpha 2.	Nucleolar protein 6.	0.893
CSNK2A2	NOP14	ENSCAPP00000011456	ENSCAPP00000006315	Casein kinase 2 alpha 2.	NOP14 nucleolar protein.	0.570
CSNK2A2	RRP15	ENSCAPP00000011456	ENSCAPP00000012320	Casein kinase 2 alpha 2.	Ribosomal RNA processing 15 homolog.	0.559
CSNK2A2	UTP6	ENSCAPP00000011456	ENSCAPP00000018118	Casein kinase 2 alpha 2.	UTP6 small subunit processome component.	0.635