Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000005548annotation not available (674 aa)    
Predicted Functional Partners:
CNOT3
CCR4-NOT transcription complex subunit 3.
   
 0.995
CNOT4
CCR4-NOT transcription complex subunit 4.
    
 0.994
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 0.994
CNOT7
CCR4-NOT transcription complex subunit 7.
   
 0.993
ENSCAPP00000007441
annotation not available
    
 0.992
CNOT8
CCR4-NOT transcription complex subunit 8.
   
 0.992
CNOT6
CCR4-NOT transcription complex subunit 6.
   
 0.990
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.990
ENSCAPP00000009291
annotation not available
    
 0.981
ZFP36L1
ZFP36 ring finger protein like 1.
    
 0.980
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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